PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P11870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 340aa    MW: 38651.4 Da    PI: 8.308
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P11870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-05237259123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            + C +Cgk F  + + ++H +++
  GSMUA_Achr3P11870_001 237 FMCRKCGKAFAVRGDWRTHEKNC 259
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.9E-6153172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.58153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64153180IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-6220257No hitNo description
Gene3DG3DSA:3.30.160.609.0E-6233257IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549237257IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAEDPYTSCF KGYYDRCTFP STFPSSLPAT THSFYANFTN YATPHFQPSP PSPPLREALP  60
LLSLSPTRHH RQQQRQEEGE DSSCSAFEEA EGDATVGYEK KNMEEENVSV ALHIGLPSPS  120
EADLISRISS TSLTRGQYWI PTLSQILIGP TQFSCPVCCK TFNRYNNMQM HMWGHGSQYR  180
KGPESLRGTQ PTAMLRLPCY CCAPGCRNNI DHPRSRPLKD FRTLQTHYKR KHGIKPFMCR  240
KCGKAFAVRG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH IRAFGSGHAA YGIDCFDEDD  300
EPSSEIEQDC DHHQQQVQVQ QHTQSGNKKT VNGRKKTSLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0711041e-169AK071104.1 Oryza sativa Japonica Group cDNA clone:J023078D20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391887.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-128ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM0SDV40.0M0SDV4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P11870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-125C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]