PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P11970_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 209aa MW: 22778.4 Da PI: 9.0999

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P11970_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.1e-32	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLH+rFv av+qLGG+e+AtPk +l++m+v gLt++hvkSHLQkYRl GSMUA_Achr3P11970_001 18 RQRLRWTNELHDRFVLAVTQLGGPERATPKGVLRIMGVAGLTIYHVKSHLQKYRL 72 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.064	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	3.23E-17	17	72	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.3E-31	17	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-25	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	6.6E-8	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-20	105	150	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MVLNSGGNNS DNHNLASRQR LRWTNELHDR FVLAVTQLGG PERATPKGVL RIMGVAGLTI 60 YHVKSHLQKY RLAKCVPDSS ADDAKSEKKD PDGVSSGLES SSGTQITEAL KLQMEVQKRL 120 HEQSEVQRQL QRRIEAQGKY LKTIIKEQQQ LSGELAETPG GDISACSYVD NSSGSAKTGP 180 HRSVNGDHGG TGKLLKSLSH DNSLREPEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-22	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-22	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-22	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-22	18	74	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018679298.1	1e-150	PREDICTED: myb family transcription factor PHL7-like isoform X1
Swissprot	Q9SJW0	2e-73	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	M0SDW4	1e-152	M0SDW4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P11970_001	1e-153	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	7e-76	G2-like family protein