PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P11990_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YC

Protein Properties

Length: 159aa MW: 18005.4 Da PI: 6.6727

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P11990_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	45.3	1.9e-14	46	83	1	35
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkaded 35 ql+ fw++q ie++tdfknh+lPlarikki+kaded GSMUA_Achr3P11990_001 46 QLQLFWADQyreIEQTTDFKNHSLPLARIKKIMKADED 83 89***99999***********************9 PP
2	NF-YC	37.8	4.1e-12	82	114	69	101
NF-YC 69 nkrrtlkksdiaaavtrtdifdflvdivprdel 101 +rrtl+k+diaaa++rtd+fdfl+divpr+e GSMUA_Achr3P11990_001 82 EDRRTLQKNDIAAAISRTDVFDFLIDIVPREEG 114 579***************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.26E-12	40	105	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	4.4E-8	60	83	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.1E-8	84	111	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MDQPGHTTPP VMGVATGVPY AAAAGGGPYQ AYQHLYHQQQ QQQQQQLQLF WADQYREIEQ 60 TTDFKNHSLP LARIKKIMKA DEDRRTLQKN DIAAAISRTD VFDFLIDIVP REEGKEDVAR 120 PLGGPPTDPM SYYYAQHSIS NVLWAKLILR TCLSCGQFL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	89	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391901.1	2e-74	PREDICTED: nuclear transcription factor Y subunit C-6-like
Refseq	XP_009391902.1	2e-74	PREDICTED: nuclear transcription factor Y subunit C-6-like
Refseq	XP_009391903.1	2e-74	PREDICTED: nuclear transcription factor Y subunit C-6-like
Refseq	XP_009391904.1	2e-74	PREDICTED: nuclear transcription factor Y subunit C-6-like
Refseq	XP_018679662.1	2e-74	PREDICTED: nuclear transcription factor Y subunit C-6-like
Swissprot	Q8LCG7	2e-32	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	M0SDW6	1e-116	M0SDW6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P11990_001	1e-116	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	2e-32	nuclear factor Y, subunit C2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]