PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P12130_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 381aa MW: 41393.4 Da PI: 9.4382

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P12130_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.4e-09	205	253	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+el+P + sk Ka +L + ++Y++sLq GSMUA_Achr3P12130_001 205 NSHSLAERVRREKISERMKYLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 253 58***********************9....556***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-17	200	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.22E-10	200	257	No hit	No description
PROSITE profile	PS50888	15.491	202	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-6	205	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.8E-17	205	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.7E-10	208	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MLPSPPPGEF PHSLPHFPVD SGLIERAARL SCFGGGGSFR GISLLGPSQS MTPPSGASKD 60 AIGARVQKAE LNVVSLPVEH GTIKGITMNN KRDRSISQVG TSNNKSREGN FCEEGQERHT 120 GSADAAGNSS SSDLGANKRR KATEETEKEK DQVLRGLQSS TETTKDNTET KFKSYKHSGK 180 NAKDNSEAAK EGYVHVRAQR GQATNSHSLA ERVRREKISE RMKYLQELVP GCSKVTGKAV 240 MLDEIINYVQ SLQRQVEFLS MKLAAVNPQL DFSIEGLLAK NLLHSHGGSS SAAGFSQEMI 300 YPQVYSSQQG LAHAGISSML NPSDAFRRTL ITEIPMASGY KETSLQMHNS WNEQLVMQMA 360 YGANPPLNSQ AINRKPDGFT I

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MLPSPPPGEF PHSLPHFPVD SGLIERAARL SCFGGGGSFR GISLLGPSQS MTPPSGASKD  60
AIGARVQKAE LNVVSLPVEH GTIKGITMNN KRDRSISQVG TSNNKSREGN FCEEGQERHT  120
GSADAAGNSS SSDLGANKRR KATEETEKEK DQVLRGLQSS TETTKDNTET KFKSYKHSGK  180
NAKDNSEAAK EGYVHVRAQR GQATNSHSLA ERVRREKISE RMKYLQELVP GCSKVTGKAV  240
MLDEIINYVQ SLQRQVEFLS MKLAAVNPQL DFSIEGLLAK NLLHSHGGSS SAAGFSQEMI  300
YPQVYSSQQG LAHAGISSML NPSDAFRRTL ITEIPMASGY KETSLQMHNS WNEQLVMQMA  360
YGANPPLNSQ AINRKPDGFT I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391925.1	0.0	PREDICTED: transcription factor bHLH76-like
Refseq	XP_018679551.1	0.0	PREDICTED: transcription factor bHLH76-like
TrEMBL	M0SDY0	0.0	M0SDY0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P12130_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2909	37	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	6e-64	bHLH family protein