PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P12320_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

TCP

Protein Properties

Length: 202aa MW: 20920.3 Da PI: 4.1881

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P12320_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	75.7	1.3e-23	1	50	24	73
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++a caar+F+L++eLG+++d++ti WLlq a+pai+++tgt++ +a ++ GSMUA_Achr3P12320_001 1 MPAACAARIFQLTRELGHKSDGETIRWLLQHAEPAIIAATGTGTVPAIAT 50 9*****************************************77777333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-18	1	54	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.428	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MPAACAARIF QLTRELGHKS DGETIRWLLQ HAEPAIIAAT GTGTVPAIAT VVDGAIKIPT 60 EAPSSSSAGL TAVTAFYPVQ DPLLQGALWM LPQPTAMVEP SGQAQIWTFP AASQIINLGG 120 PHPMAATAVY PGAAPGPNVA TAAGGGEPRT NEQAVTSTDG KKQELQLMGG ARGRRRDALL 180 ETEEESESDA EEEPPSESDA ED

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391944.1	1e-113	PREDICTED: transcription factor PCF2-like
TrEMBL	M0SDZ9	1e-142	M0SDZ9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P12320_001	1e-143	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3912	31	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-31	TCP family protein