PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P12550_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SRS

Protein Properties

Length: 304aa MW: 32677.3 Da PI: 7.9398

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P12550_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	207.8	2.8e-64	88	230	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89 +sg++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstW+pa+krrerqq+laaa a++ kr+re ++ + + ++ GSMUA_Achr3P12550_001 88 GSGGMSCQDCGNQAKKDCAHMRCRTCCKSRGFQCTTHVKSTWIPATKRRERQQHLAAA--------AASPFKRPREI--TACTRIPNA 165 5789*************************************************997........55678888886..444444444 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++++ +le +slP+evs++a+frcvrvs vd+ ++ +aYqtavsigGhvfkGiLyd+G+e+ GSMUA_Achr3P12550_001 166 LATTTTYGGSLEPESLPPEVSTQAMFRCVRVSHVDEPDDVYAYQTAVSIGGHVFKGILYDHGPEA 230 444555566889999*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	8.3E-61	91	229	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.3E-26	93	135	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.1E-22	181	228	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MAGFFLGGGG GSQQQRGDQQ AGGIPPTEGF FLYGGRGSRG EDVAYTRGFE LWQQHQIQRD 60 HQLYSAAGFP NEMPSVASRP TRGSLEGGSG GMSCQDCGNQ AKKDCAHMRC RTCCKSRGFQ 120 CTTHVKSTWI PATKRRERQQ HLAAAAASPF KRPREITACT RIPNALATTT TYGGSLEPES 180 LPPEVSTQAM FRCVRVSHVD EPDDVYAYQT AVSIGGHVFK GILYDHGPEA DYPSSSSSRY 240 QLHHREGSSS PAPAAAAAAA ITNISTGDAT IATAAAATEL LEPYPTPLSA YMACTQFFPH 300 QHRQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009391967.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 7-like
TrEMBL	M0SE22	0.0	M0SE22_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P12550_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1354	35	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19790.2	7e-58	SHI-related sequence 7