PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P14630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 365aa    MW: 41787.5 Da    PI: 4.7078
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P14630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like82.83.7e-26201254155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  GSMUA_Achr3P14630_001 201 KARVVWSVDLHQKFVNAVNQI-GLDKVGPKKILDLMNVPGLTRENVASHLQKYRL 254
                            68*******************.********************************8 PP
2Response_reg80.36.6e-27191271109
                            EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS
           Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 
                            vl+vdD+p+ +++l+++l+k  y ev++++ +++al +l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + +
  GSMUA_Achr3P14630_001  19 VLVVDDDPTWLKILEKMLRKCSY-EVTTCSLATDALSMLRERKdkFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSIDGETSRV 104
                            89*********************.***************887778**********************6644.8*************** PP

                            HHHHHTTESEEEESS--HHHHHH CS
           Response_reg  87 lealkaGakdflsKpfdpeelvk 109
                             + ++ Ga d+l Kp+ ++el +
  GSMUA_Achr3P14630_001 105 MKGVQHGACDYLLKPVRMKELKN 127
                            *******************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521729.68E-3616145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23008.2E-4516144No hitNo description
SMARTSM004487.4E-3117129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.94818133IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.5E-2419127IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.23E-2720132No hitNo description
SuperFamilySSF466893.05E-18199258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28200259IPR009057Homeodomain-like
TIGRFAMsTIGR015572.9E-23201254IPR006447Myb domain, plants
PfamPF002491.3E-7203253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MERPLLSARA EAFPAGLRVL VVDDDPTWLK ILEKMLRKCS YEVTTCSLAT DALSMLRERK  60
DKFDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSIDGE TSRVMKGVQH GACDYLLKPV  120
RMKELKNIWQ HVYRKKMHEL KEIQTHYNNE DINILRYGSE DLDDRNLTDG ITNISSARKR  180
KDVDYKEFGD QEFGDSSRLK KARVVWSVDL HQKFVNAVNQ IGLDKVGPKK ILDLMNVPGL  240
TRENVASHLQ KYRLYLSRLQ KQSEDSTSGF STEQIDNQEC LPLTCEFSPK SEAELDSLPA  300
DLHLCSIQKF GCFEDVGFGG AENFQDIIST PDTQVQNDWY ISSELSSDYL YETVDYPLID  360
ECLFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-18200259463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392349.10.0PREDICTED: two-component response regulator ORR26 isoform X1
SwissprotQ5N6V81e-141ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLM0SEN00.0M0SEN0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P14630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-118response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]