PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P15060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 164aa    MW: 18261.9 Da    PI: 9.0446
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P15060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1816.8e-5671566170
                  YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                             ++qvCyv C+fCnt+l+v+vP+  +f++vtvrCG C+++l vnl+     l+ ++         + ++l++++ +     + + s+s
  GSMUA_Achr3P15060_001   7 LPDQVCYVGCSFCNTVLVVNVPHDNSFNIVTVRCGLCANILYVNLEALLGKLPLQNL--------QSHNLGSQHLH-----MDSGSSS 81 
                            79*********************************************9999998874........33344443333.....3344444 PP

                  YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            t +s + +s+ +   v+++ + i+P   ++r+Psaynrfikeeiqr+ka+nP+ish+eafs+aaknWahfP+ihfgl
  GSMUA_Achr3P15060_001  82 TRTSLSVMSSMD--FVQQQMQLIHPSTEKRRAPSAYNRFIKEEIQRLKAKNPNISHKEAFSTAAKNWAHFPEIHFGL 156
                            444444443322..2333446789999999*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.2E-618156IPR006780YABBY protein
SuperFamilySSF470956.41E-8105150IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.3E-6108151IPR009071High mobility group box domain
CDDcd013907.77E-7109151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MSSGHVLPDQ VCYVGCSFCN TVLVVNVPHD NSFNIVTVRC GLCANILYVN LEALLGKLPL  60
QNLQSHNLGS QHLHMDSGSS STRTSLSVMS SMDFVQQQMQ LIHPSTEKRR APSAYNRFIK  120
EEIQRLKAKN PNISHKEAFS TAAKNWAHFP EIHFGLSIKG NKQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392392.11e-120PREDICTED: protein YABBY 2-like isoform X1
SwissprotQ10FZ75e-52YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0SES21e-119M0SES2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P15060_0011e-120(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.29e-50YABBY family protein