PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P15140_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRF
Protein Properties Length: 488aa    MW: 52704.9 Da    PI: 7.6666
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P15140_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.13.6e-24217261145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  GSMUA_Achr3P15140_001 217 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 261
                            79****************************************985 PP
2QLQ55.41.8e-19149185137
                    QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                            ++FT++Q+ +L++Q+l+yKyL+ n+P+P+ Ll++i++
  GSMUA_Achr3P15140_001 149 GPFTPSQWLELEHQALIYKYLVVNVPIPATLLVPIRR 185
                            59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.9E-11149185IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.459150185IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-13150184IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.455217261IPR014977WRC domain
PfamPF088791.6E-20218260IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDFGEVVSMD GLVGASSSEG GNLFSSSLTS QDTQVSRQRG FFGSIFHKHD RPAEPEDCDW  60
RSLKMARTEA LVAAPTKTPH FLRSDSHHLF PDGEHMLSFS STSKQSDMAV SGDATLPYHI  120
RPSAPSPTGC LFSATSHASM QGVLARVRGP FTPSQWLELE HQALIYKYLV VNVPIPATLL  180
VPIRRSLNAS GFPSLSSGSF DSVGWGQFHV GFSGNADPEP GRCRRTDGKK WRCSRDAVAD  240
QKYCERHMNR GRHRSRKHVE GHTGHAAKAM PAIASSQSAS AVPDGTLSAS LTISQHENKK  300
LQSNITDPHP VQLNGHLIEE TQSDRTQLSI SIPMSCSDFS SSSSSNHDKL ALSPLKLSRE  360
HDPIPMGLGV GLLNEVCHRQ ASWRPISWEA SMAGPLGEVL TSTNSSTPKD QSKNCSSSLN  420
LLCDNWDSSR QLESSPTGVL QKASFGSLSS SNGSSPRVEN LKIHESTGKL CNELLGSAVV  480
NTPTIPSL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0637593e-35BT063759.1 Zea mays full-length cDNA clone ZM_BFc0104G18 mRNA, complete cds.
GenBankBT0645383e-35BT064538.1 Zea mays full-length cDNA clone ZM_BFc0179B15 mRNA, complete cds.
GenBankBT0670853e-35BT067085.1 Zea mays full-length cDNA clone ZM_BFb0185D09 mRNA, complete cds.
GenBankBT0880163e-35BT088016.1 Zea mays full-length cDNA clone ZM_BFb0357C16 mRNA, complete cds.
GenBankEU9699093e-35EU969909.1 Zea mays clone 337118 growth-regulating factor 1 mRNA, complete cds.
GenBankEU9736473e-35EU973647.1 Zea mays clone 403513 growth-regulating factor 1 mRNA, complete cds.
GenBankKJ7268773e-35KJ726877.1 Zea mays clone pUT3418 GRF transcription factor (GRF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392381.10.0PREDICTED: growth-regulating factor 6 isoform X2
SwissprotQ6AWY22e-82GRF7_ORYSJ; Growth-regulating factor 7
TrEMBLM0SET00.0M0SET0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P15140_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42903568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.19e-56growth-regulating factor 1