PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P15690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 254aa    MW: 27463.8 Da    PI: 7.5001
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P15690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.55.7e-2860117258
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                            +D ++WrKYGqK++kgs++prsYYrC+s  gCp++k+ve+s+ dp+ +++tY+ +Hnh
  GSMUA_Achr3P15690_001  60 SDSWSWRKYGQKPIKGSPYPRSYYRCSSCkGCPARKQVECSRLDPTKLIVTYSFDHNH 117
                            69************************9988**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575129No hitNo description
SuperFamilySSF1182903.01E-2455118IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-2955118IPR003657WRKY domain
SMARTSM007748.5E-3259119IPR003657WRKY domain
PROSITE profilePS5081129.19560120IPR003657WRKY domain
PfamPF031061.6E-2461117IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDAWKPEEDR GGDRELKPTP PLASSSSSCS KRSQLPVQKR VVSVTVGSKP LHAGEAFPPS  60
DSWSWRKYGQ KPIKGSPYPR SYYRCSSCKG CPARKQVECS RLDPTKLIVT YSFDHNHLCP  120
LPRNGSHHQN RLPPPAPPPI EEPAPPAQSG FRPLESTPEQ EAKYPVVIGK NEPLQLVDGG  180
RLPWFSDVAS ASTTSAGSDE LLYGSLHFGS DAATGSMAGE REAGLGEESL FAGLGELPEY  240
SVVLRWGLTS GHTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-16601201574WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392499.10.0PREDICTED: probable WRKY transcription factor 65
TrEMBLM0SEY50.0M0SEY5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P15690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP70883651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.17e-31WRKY DNA-binding protein 65