PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P15840_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 249aa    MW: 27692.1 Da    PI: 8.92
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P15840_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.52.7e-28110170158
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                            +dDgy+WrKYGqK++ g+++pr+YYrCt++   gCp+ k+v+rs+edp ++++tY+g H++
  GSMUA_Achr3P15840_001 110 VDDGYSWRKYGQKDILGAKHPRGYYRCTHRvaqGCPAMKQVQRSDEDPLLFHVTYHGMHTC 170
                            59***************************9999**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-28107170IPR003657WRKY domain
SuperFamilySSF1182908.5E-26109170IPR003657WRKY domain
SMARTSM007741.3E-39110172IPR003657WRKY domain
PROSITE profilePS5081122.917111168IPR003657WRKY domain
PfamPF031061.5E-26111170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEKDQCLLLA ELARARKLVG QMEAELHRHS ANESCKALLR ELFASIEKSI CMAKTSRPDS  60
SRPSSGESSQ SDPSKPGFKD HTPKKRKTLP KWTSEVRVSS AAGGVFEGPV DDGYSWRKYG  120
QKDILGAKHP RGYYRCTHRV AQGCPAMKQV QRSDEDPLLF HVTYHGMHTC LRKQGQKQRR  180
PKEDEHQTGL RNCFSSSTSP TFQSPAASDS TFFSLSRCVF EDGIKLWSPE SEVTEMVSGA  240
NSAANPPAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20110170868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392464.11e-169PREDICTED: probable WRKY transcription factor 41
TrEMBLM0SF000.0M0SF00_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P15840_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-36WRKY family protein