PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P16470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family E2F/DP
Protein Properties Length: 279aa    MW: 31760.1 Da    PI: 6.6358
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P16470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP76.23.1e-2456135271
                E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                            k+++Lr +++    ++ k++e g++t+neva+e++ e             d+kn+rRR+YD++NVL+a+n+i+k +k+ei+w g
  GSMUA_Achr3P16470_001  56 KGWGLRRFSTI---VCDKVKEkGRTTYNEVADEIIYElsslekkdlqfvfDEKNIRRRVYDAFNVLMAINVIAK-DKKEIKWVG 135
                            689********...*****999****************************************************.*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094048.9E-892278IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.103.8E-3752140IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.2E-2555135IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.32E-1758136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.0E-2058135IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144581.43E-26142243IPR014889Transcription factor DP, C-terminal
SMARTSM011384.6E-30142260IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440747.06E-30142254No hitNo description
PfamPF087812.2E-28143262IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MHANHSTNIP SGATDRTMIP KCEYVPNLIN SSMQEDEIYE DPDSPAGKKK KAPRIKGWGL  60
RRFSTIVCDK VKEKGRTTYN EVADEIIYEL SSLEKKDLQF VFDEKNIRRR VYDAFNVLMA  120
INVIAKDKKE IKWVGFPSTE TEELAQIKEE KMKLLSKIEQ KVNYLKELEE KFGDLHNLIC  180
RNRVAHKSAS VSSEGIALPF LLVQTTPKAT VEIEISEDMR SVNFEFNGTP FTLHDADSIL  240
RAMRRPTSVE RGHDNNNSTE SPELVADQNC QKLHPASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B7e-2857142995PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392536.10.0PREDICTED: transcription factor-like protein DPB
RefseqXP_018678602.10.0PREDICTED: transcription factor-like protein DPB
RefseqXP_018678603.10.0PREDICTED: transcription factor-like protein DPB
SwissprotQ9FNY24e-69DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM0SF630.0M0SF63_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P16470_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.12e-71Transcription factor DP