PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P16490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 168aa    MW: 19089.7 Da    PI: 11.2865
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P16490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.8e-182065147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
  GSMUA_Achr3P16490_001 20 RGHWRPGEDEKLRQLVEQFGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 65
                           899*****************************.***********996 PP
2Myb_DNA-binding59.19.5e-1973114245
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             ++T eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+
  GSMUA_Achr3P16490_001  73 RPFTDEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWH 114
                            69*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8211570IPR017930Myb domain
SMARTSM007171.8E-131968IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-2919113IPR009057Homeodomain-like
PfamPF002493.4E-172065IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-272173IPR009057Homeodomain-like
CDDcd001671.04E-122364No hitNo description
PROSITE profilePS5129420.15271122IPR017930Myb domain
SMARTSM007179.4E-1571119IPR001005SANT/Myb domain
PfamPF002491.6E-1572114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2174116IPR009057Homeodomain-like
CDDcd001673.58E-1274114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MGSSSKSAGG SDEGRRACLR GHWRPGEDEK LRQLVEQFGP QNWNSIAEKL QGRSGKSCRL  60
RWFNQLDPRI NKRPFTDEEE ERLLAAHRIH GNKWALIARL FPGRTDNAVK NHWHLRFRVP  120
RADFWNLPLL TKTSAILAPL NPPGGTGLYG ASNIYRALNT LSQVRTLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31191136100B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM9015693e-63AM901569.1 Musa acuminata subsp. malaccensis partial Ty3-gypsy-like retrotransposon, clone rGyLTR7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392543.11e-71PREDICTED: transcriptional activator Myb-like
SwissprotQ6R0C42e-59MYB52_ARATH; Transcription factor MYB52
TrEMBLM0SF651e-120M0SF65_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P16490_0011e-121(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.18e-62myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]