PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P16850_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 152aa MW: 16583.8 Da PI: 10.2204

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P16850_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	56	90	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ ++ ++L++l+ + +K + a++L +A+ YIk L GSMUA_Achr3P16850_001 56 RMGERVAKLQQLVSPF-----GKSDTASVLSEATAYIKFL 90 6667788999999887.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.864	41	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0076	50	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.36E-4	52	95	No hit	No description
SuperFamily	SSF47459	3.01E-9	54	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-6	54	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MMMTEVADHK RASHDGFVLR DMSGSSRSHN DSSGGKRPKT SDGGRGAATS TKEKDRMGER 60 VAKLQQLVSP FGKSDTASVL SEATAYIKFL HEQLQVLCAP YLRKAVTGKM EGDDHYSLRS 120 RGLCLVPLSS TFQIARSNGA DLWAPVNTNR KP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392597.2	1e-111	PREDICTED: transcription factor bHLH113-like isoform X2
Refseq	XP_018679184.1	1e-111	PREDICTED: transcription factor bHLH113-like isoform X1
Refseq	XP_018679185.1	1e-111	PREDICTED: transcription factor bHLH113-like isoform X2
Swissprot	Q7XJU2	4e-39	BH153_ARATH; Transcription factor bHLH153
TrEMBL	M0SFA1	1e-109	M0SFA1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P16850_001	1e-110	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5272	8	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	3e-41	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]