PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P17770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 239aa    MW: 26714.5 Da    PI: 8.7569
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P17770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-075341647
                           HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +++G + Wk+I + +g ++t  q++s+ qky
  GSMUA_Achr3P17770_001  5 YEKFGRD-WKKIEEFVG-TKTTIQIRSHAQKY 34
                           6899977.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.844139IPR017930Myb domain
CDDcd001676.42E-4235No hitNo description
SuperFamilySSF466891.05E-8440IPR009057Homeodomain-like
PfamPF002491.2E-5534IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.3E-9637IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MIYGYEKFGR DWKKIEEFVG TKTTIQIRSH AQKYFLKVQK IGLAAHVPPP HPKRKMAHPT  60
QQINPNNAIV SVDCLYASSR ILPACSVWDN TSNDVNYTPS EATSLPACYT ISPDIEGDSG  120
IFGKTSIYSQ NIDWSGNLSG SLLTHRATKQ RNPHPDFAQV YTFIGSMFDP NITWRAEHFF  180
EKLQDVDPVT AKIILILMRN LAVNLTSPSL EPLIRWLGTY DVNTRKVAAI GGTAAFADI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392744.11e-174PREDICTED: protein REVEILLE 8-like isoform X1
TrEMBLM0SFJ31e-179M0SFJ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P17770_0011e-180(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.13e-52MYB_related family protein