PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P17800_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 234aa MW: 25302.8 Da PI: 8.3647

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P17800_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.5	7.8e-37	74	173	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk lrr+C+ +C lap fp +++ kf +h++FGa n++kll++lpe++r da++s+vyeA+ar+rd vyG++gvi +lq+q++ GSMUA_Achr3P17800_001 74 PCAACKSLRRRCTVSCLLAPFFPPTETLKFTTAHRVFGAGNIIKLLQDLPESRRADAVNSMVYEANARLRDRVYGCAGVICHLQKQVD 161 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 +l+++la+++++ GSMUA_Achr3P17800_001 162 ELQEQLARAQAK 173 *****99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.631	73	174	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-38	74	171	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MLCRRDLWHS INCNGLRSPT RSLHSLIMSS SSDTTTASAT TTILATKTTP PPFSPSLSSS 60 ANSAPPPHPT ALSPCAACKS LRRRCTVSCL LAPFFPPTET LKFTTAHRVF GAGNIIKLLQ 120 DLPESRRADA VNSMVYEANA RLRDRVYGCA GVICHLQKQV DELQEQLARA QAKHVILQAQ 180 HAQLLASTAT ARSQQQRPGE ATDGVVADSC MLQNGGYCVD DCGLGSVWEE PRWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-36	64	167	1	104	LOB family transfactor Ramosa2.1
5ly0_B	8e-36	64	167	1	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392713.1	1e-151	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	3e-55	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	M0SFJ6	1e-172	M0SFJ6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P17800_001	1e-173	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	8e-57	LOB domain-containing protein 1