PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P18260_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 224aa    MW: 24770.4 Da    PI: 7.3665
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P18260_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof115.52.2e-363991254
                 zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGgg 54
                           ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvG+ 
  GSMUA_Achr3P18260_001 39 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGAL 91
                           6899***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-243790IPR003851Zinc finger, Dof-type
PfamPF027012.4E-314190IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.7394397IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104581IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MDTTQWSQEF ASSTTTTSGS DTCTTTRTQV TERRPRPHKE QALNCPRCNS TNTKFCYYNN  60
YSLTQPRYFC KTCRRYWTEG GSLRNVPVGA LATASAPKKF HADLIPPSIL LSTNSETPKL  120
HEKQDLNLAF RQHSIPEYND YFNLEISNAN NISSSNSNYW GGGGIGGGGY GDLPGIQESV  180
TGKLLFPLEV LKPAIPSNNV ADQFEVQGDD PPRYWNGVIG GGSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9770162e-52JN977016.1 Molineria latifolia clone CL27 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393919.11e-110PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
SwissprotB9F1L81e-35DOF2_ORYSJ; Dof zinc finger protein 2
SwissprotQ8LAP88e-36DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLM0SFP21e-166M0SFP2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P18260_0011e-167(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.17e-33Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]