PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P18320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 400aa    MW: 43068.8 Da    PI: 6.7642
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P18320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.9e-19314348135
                   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  GSMUA_Achr3P18320_001 314 CSHCGAQKTPQWRAGPLGAKTLCNACGVRFKSGRL 348
                            *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.701308344IPR000679Zinc finger, GATA-type
SMARTSM004015.3E-16308362IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14311371No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14312346IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.92E-13313355No hitNo description
PfamPF003201.7E-16314348IPR000679Zinc finger, GATA-type
PROSITE patternPS003440314339IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MTYLGRKWKK RRNLSSFLVL LCFVLHPKHV FLPFFFFFLL YAEVYESLVG LQGEKESNME  60
VVNANLRPEI LCSGQQKQQN QVVLSEEAGW AVERGNIMGE AFSVDDLLNL GEFVEDEMEA  120
AEEEAGRVCQ IDAREAHNET THSSSSSSSS SGLTFELPLP LSDICLPAHD AAELEWVSFI  180
IDDSISEFPS CSGVASLSPP PSGAQSENLQ ARAAEPQGQG PSFLVPNVCA LSTEAKVPVK  240
AKRSKRLRSA TATAAWSMSG PLSLADSSSC SSATTTSSAS SCSSTSSSSP FLIYDPSAVA  300
PKTPLSTASG ERRCSHCGAQ KTPQWRAGPL GAKTLCNACG VRFKSGRLLP EYRPACSPTF  360
VSHKHSNSHR KVLEMRRKKE AELLAPAASP PPPLLVAVSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260410.0AC226041.1 Musa acuminata clone BAC MA4-4L11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018678843.10.0PREDICTED: GATA transcription factor 5-like isoform X2
TrEMBLM0SFP80.0M0SFP8_MUSAM; GATA transcription factor
STRINGGSMUA_Achr3P18320_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-43GATA transcription factor 5