PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P18680_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 235aa    MW: 26412.7 Da    PI: 8.6679
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P18680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.63.1e-46101341128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeelvv+yLk+kv + +l++ ++i+++d+ +++PwdLp    ++e+e y Fs r+ k+++ +r+nr+++sgyWka+g+
  GSMUA_Achr3P18680_001  10 LPPGFRFHPTDEELVVQYLKRKVFSCPLPA-SFIPDLDLARFDPWDLP---GGGEEERYCFSLREAKSPSRSRSNRMARSGYWKASGR 93 
                            79****************************.89***************...457899******************************* PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk+++s   g++vg+kk+Lvfy g++p+g+ktdWvmheyrl
  GSMUA_Achr3P18680_001  94 DKRITSPrCGQVVGMKKVLVFYGGKHPTGSKTDWVMHEYRL 134
                            *****9878999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-547169IPR003441NAC domain
PROSITE profilePS5100553.26510169IPR003441NAC domain
PfamPF023658.3E-2611134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDNKPRLTRL PPGFRFHPTD EELVVQYLKR KVFSCPLPAS FIPDLDLARF DPWDLPGGGE  60
EERYCFSLRE AKSPSRSRSN RMARSGYWKA SGRDKRITSP RCGQVVGMKK VLVFYGGKHP  120
TGSKTDWVMH EYRLAGPEST ACIFPQRKNS THNCIIPSRD WVLCRIFKKK RATKMDVETE  180
EGEEAPVTES GIGFIDFMGQ RYRDQGHSAS SLSDSSCITD TSDGSSNGEE TSSGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-501017417170NO APICAL MERISTEM PROTEIN
1ut4_B8e-501017417170NO APICAL MERISTEM PROTEIN
1ut7_A8e-501017417170NO APICAL MERISTEM PROTEIN
1ut7_B8e-501017417170NO APICAL MERISTEM PROTEIN
3swm_A9e-501017420173NAC domain-containing protein 19
3swm_B9e-501017420173NAC domain-containing protein 19
3swm_C9e-501017420173NAC domain-containing protein 19
3swm_D9e-501017420173NAC domain-containing protein 19
3swp_A9e-501017420173NAC domain-containing protein 19
3swp_B9e-501017420173NAC domain-containing protein 19
3swp_C9e-501017420173NAC domain-containing protein 19
3swp_D9e-501017420173NAC domain-containing protein 19
4dul_A8e-501017417170NAC domain-containing protein 19
4dul_B8e-501017417170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393866.11e-176PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY935e-67NAC83_ARATH; NAC domain-containing protein 83
TrEMBLM0SFT41e-174M0SFT4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P18680_0011e-175(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63173254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-69NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]