PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P18860_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 190aa MW: 20197.4 Da PI: 8.2689

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P18860_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.2	1.6e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++++a+p+++r+++++sl++eA+ r+ +Pv Gavg+++++ GSMUA_Achr3P18860_001 2 SCNGCRVLRKGCSEACVLRPCLqwidtAEAQGHATVFVAKFFGRAGLMSFISAVPDHQRPALFQSLLFEACGRTINPVGGAVGLLWTG 89 6*******************9999777889**************************************************** PP DUF260 84 qqqleqlkaelall 97 +++l+q++++++l+ GSMUA_Achr3P18860_001 90 NWHLCQAAVDTVLR 103 *****9998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.155	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-25	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MSCNGCRVLR KGCSEACVLR PCLQWIDTAE AQGHATVFVA KFFGRAGLMS FISAVPDHQR 60 PALFQSLLFE ACGRTINPVG GAVGLLWTGN WHLCQAAVDT VLRGGALRPL PSVKDGFPLA 120 AEAKRCKAVP SPLPDRACDL DLCLSPLYPA GWQKAQRPAT PSMNSEGSVT TTTSGESSAG 180 VEPRLLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009393840.1	1e-137	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	5e-70	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	M0SFV2	1e-136	M0SFV2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P18860_001	1e-137	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-72	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]