PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P19060_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ZF-HD

Protein Properties

Length: 240aa MW: 25185.5 Da PI: 10.6452

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P19060_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99	3.5e-31	27	78	4	56
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 +rY+eCl+NhAa++Gg+a+DGCgEfmp+ gee + +alkCaACgCHRnFHRre GSMUA_Achr3P19060_001 27 ARYRECLRNHAAAMGGQAYDGCGEFMPA-GEEDSLDALKCAACGCHRNFHRRE 78 79***********************9.8888*****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.1E-28	27	78	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.6E-29	28	78	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.752	29	78	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-17	32	78	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PRINTS	PR01217	1.3E-10	81	97	No hit	No description
PRINTS	PR01217	1.3E-10	104	116	No hit	No description
PRINTS	PR01217	1.3E-10	178	194	No hit	No description
PRINTS	PR01217	1.3E-10	195	212	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDLSVVPYTG GREEEAEGAG GGGGGGARYR ECLRNHAAAM GGQAYDGCGE FMPAGEEDSL 60 DALKCAACGC HRNFHRREGL SQPPPPQFPA FLPAPMPLPY HAMQPPPLAA ALPLPPRPPR 120 RPGPASGSAP GSRRSRRRRC RPSRRSWGGV SRSKTTSRST SSASRSASSG TSSRSGCTTT 180 RATSPRPHPP PPPPTPPPPT PPPATPPPPP PPPLPSTPNQ ILSYDIGFPP ILALITFHVW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	M0SFX2	1e-164	M0SFX2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P19060_001	1e-165	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-21	homeobox protein 21