PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P19210_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Protein Properties

Length: 201aa MW: 23217.1 Da PI: 7.44

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P19210_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.4	1.1e-31	41	143	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k ltpsdv+k++rlv+pk++ae++ gg+ e++ l++edesgr+W ++++y+ +s++yvltkGW++Fvk+++L++gD+v+F++ GSMUA_Achr3P19210_001 41 FEKPLTPSDVGKLNRLVIPKQHAERYfpldGGSAEGGLLLSFEDESGRVWWFRYSYWTSSQSYVLTKGWSRFVKEKKLDAGDVVLFER 128 99**************************99999**************************************************4 PP -SS.SEE..EEEEE- CS B3 85 dgr.sefelvvkvfr 98 + + +++++ +r GSMUA_Achr3P19210_001 129 PRFgGRDHFYIGCRR 143 322233333666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.2E-42	29	150	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.89E-31	37	140	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.01E-28	39	143	No hit	No description
Pfam	PF02362	1.5E-28	41	144	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-24	41	145	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.776	41	145	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MAQHHPQARA WESAMLLHHR YYHHLYHSEQ EEAPHEREHM FEKPLTPSDV GKLNRLVIPK 60 QHAERYFPLD GGSAEGGLLL SFEDESGRVW WFRYSYWTSS QSYVLTKGWS RFVKEKKLDA 120 GDVVLFERPR FGGRDHFYIG CRRQSPPPAH SMTVPDGPEP LSPTRRLRLF GVNFDCGPEP 180 EPQPMTSASW FLPGNASSSQ L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	2e-48	36	144	3	113	B3 domain-containing transcription factor NGA1
5os9_B	2e-48	36	144	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394075.1	1e-118	PREDICTED: uncharacterized protein LOC103979631
Swissprot	Q53QI0	1e-51	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	M0SFY7	1e-147	M0SFY7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P19210_001	1e-148	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	3e-51	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]