PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P19420_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 284aa    MW: 30963.5 Da    PI: 8.3393
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P19420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-173483255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr ++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a+++++g
  GSMUA_Achr3P19420_001 34 RYRGVRCRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEQAAYAYDVAARAMRG 83
                           69****999.**********93....35999**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-283390No hitNo description
SMARTSM003809.5E-323497IPR001471AP2/ERF domain
PfamPF008475.5E-113483IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-213491IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-293490IPR001471AP2/ERF domain
PROSITE profilePS5103221.8783491IPR001471AP2/ERF domain
PRINTSPR003671.0E-83546IPR001471AP2/ERF domain
PRINTSPR003671.0E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEEDHSSSSH VHNRNRSSTA GSGKRGRATK DGARYRGVRC RPWGRYAAEI RDPQSKERRW  60
LGTFDTAEQA AYAYDVAARA MRGPKARTNF YYPPTTAARP RAAAVGCVLR CPDVPHLHSP  120
IDPLLLRSLI SHSSSSMHHK PPCCPYRSSL SSCSAPPPPV TDPPTCGAAG LCGIASHPDS  180
INASFTAASS SDQSILVQSS SVAEVPNQFA DDCDFFRKEP PESGLLQEIV NGFNSHQQSM  240
HNRSHQMPSK QEEKMFDSDT FPTVPQGLLE DVFGVFSAKL HKAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-182390471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9548772e-40EU954877.1 Zea mays clone 1489895 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394069.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLM0SG080.0M0SG08_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P19420_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-24DORNROSCHEN-like