PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P20020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 320aa    MW: 35514 Da    PI: 7.4372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P20020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-06109158154
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            +++ + +rE+  Rd++N+ f eL + l ++     + + Ka+iL  A++ +++L
  GSMUA_Achr3P20020_001 109 KKEHKAMREKMKRDHLNDLFLELGQALETS----RQNNGKASILVDATRLLRDL 158
                            577889***********************8....57899999**9999998877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-11105173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-5106163No hitNo description
Gene3DG3DSA:4.10.280.101.5E-8106176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.115108158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-4109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MLLPRWVPNE REGHVEADGQ WDVPNEHGRR LSLSLSLRLS PGEQRLVSLE TWKESNSVLS  60
RRVVCSLQTR NRNMVAKASA SMASGANAVS EQSAGRSIPS TKMSRKVPKK EHKAMREKMK  120
RDHLNDLFLE LGQALETSRQ NNGKASILVD ATRLLRDLLA QVEVLRKENV TLMNESHYVT  180
EEKNELQDEK NVLKAEVEKL QNVLHEGTQS DPMAEWHSKS DLAPPTLPQS LTAALPMQQQ  240
PVAPLIDIAL HQDLNPLSDA AISPPSPAAT SKVSRPHARY PTPSDTWSLE LLSRNQRAAH  300
EAQHGSGSTS DGRVEGLDNQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393705.11e-178PREDICTED: transcription factor bHLH47
RefseqXP_009393706.11e-178PREDICTED: transcription factor bHLH47
RefseqXP_018678345.11e-178PREDICTED: transcription factor bHLH47
TrEMBLM0SG680.0M0SG68_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P20020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.39e-39bHLH family protein