PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P20290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 383aa    MW: 42273.6 Da    PI: 4.644
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P20290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.91.3e-30217276159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                            ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  GSMUA_Achr3P20290_001 217 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 276
                            58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-32202278IPR003657WRKY domain
SuperFamilySSF1182901.44E-27211278IPR003657WRKY domain
PROSITE profilePS5081128.495217278IPR003657WRKY domain
SMARTSM007741.4E-37217277IPR003657WRKY domain
PfamPF031065.8E-27218276IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MHIDLALETA DDEVRALEEA EDGGDREEEE EEKEEGEVAI SNEDKEANKH QEENQTEEKE  60
QSYEKTTAED VIKDELCVLQ AEMERMKEEN RMLEEAIDRT MKDYYDLQIK FADIQQEDQP  120
KEHQVFLSLG RQSSGEIKQA KVADRGSGLA DDEELCLSLS LHTHVDPHQR DDAREEKGKG  180
LKSWAAGELT TITSQSINPA TRKTRVSVRA RCQGPPMNDG CQWRKYGQKV AKGNPCPRAY  240
YRCTVAPGCP VRKQVQRCLE DMSILVTTYE GTHNHPLPVG ATAMASTTAA SANSLSSSPL  300
SYLNPYLANP SPQLSTMRSF TSSAGYSGIF GGRQQLDILG PHHQATSSAA GGGSWISTGH  360
GVWNGEDEKS LAEQVGVIAS TQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22204280176WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393667.10.0PREDICTED: probable WRKY transcription factor 9 isoform X1
TrEMBLM0SG950.0M0SG95_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P20290_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.17e-61WRKY DNA-binding protein 9