PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P20390_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 207aa    MW: 22298.8 Da    PI: 6.6211
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P20390_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.98.8e-324396357
            ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                           +vrY+eClkNhA+ +GghavDGC+Efm++ geegt +al CaACgCHRnFHR+++
  GSMUA_Achr3P20390_001 43 GVRYRECLKNHAVGIGGHAVDGCREFMAA-GEEGTLDALSCAACGCHRNFHRKDS 96
                           68**************************9.999********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-294495IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-214595IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-274595IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.0324695IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.9E-16137199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28143200IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-24144197IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDFDDHDEGD EEIGLPVGSS YDTVMENLGS GHRKAHGGGS GGGVRYRECL KNHAVGIGGH  60
AVDGCREFMA AGEEGTLDAL SCAACGCHRN FHRKDSGGSG AGGGAAGGGG AMEVTGYHPQ  120
PSPLALPSTS GVGGHSREDH DDVFRTKFTQ EQKEKMLAFA ERLGWRIQKH DEAAVQQFCE  180
ETCIKRHVLK VWMHNNKHTL ALLWRRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-271441992075ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9632771e-53EU963277.1 Zea mays clone 260287 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393645.11e-118PREDICTED: zinc-finger homeodomain protein 2-like isoform X3
SwissprotA2Z2591e-66ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLM0SGA51e-151M0SGA5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P20390_0011e-152(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-60homeobox protein 22