PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P20780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 347aa    MW: 38705.5 Da    PI: 8.3116
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P20780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000162442821154
                            HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             R +++ ++++ L++l+ +      +K + a++L +A+ YIk L
  GSMUA_Achr3P20780_001 244 VRKEKMGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFL 282
                            5778999***********98.....8****************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.566233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-4243287No hitNo description
Gene3DG3DSA:4.10.280.101.4E-7243290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-10243295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MVSDANGTVS SQRAFSLSHG HSPASSQTIQ NLGFHCEEGF FTYQLPVHQL HPTKITEFPD  60
NSSFPKLNGF CKDFSSNDDC RPHEKLYVRR IDTGRQTDGL QPLPGNLSEN SWCDSHGGGR  120
ESFSMGFSTA YLSHSSPRLP FLSGSSDMDL HAMDLLASAR LGRSFCQTSF TGMVSLLGED  180
ASSGFGHLPE SFQGPFHHHR KMPSLASGAA EVRTVNSSWE HKPLQTEPTK PRFEQHSSFS  240
PFKVRKEKMG DRIAALQQLV APFGKTDTAS VLMEAIGYIK FLLDQVEKLS LPYLRSSGNK  300
RPRTMQERHK CEVKQNMASN EERDEMGKRD LRSRGLCLVP LSRTSYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393607.10.0PREDICTED: transcription factor bHLH110-like
TrEMBLM0SGE40.0M0SGE4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P20780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-42bHLH family protein