PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P20800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 168aa    MW: 19407.4 Da    PI: 9.5842
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P20800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12454655
                           HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                    HLH  6 nerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                           + +E++RR +++    +L +l+Pk ++++sk  ls ++ L +A+ YIk+Lq
  GSMUA_Achr3P20800_001  4 KTVEKNRRMHMKRLCMKLASLIPKEYATNSKDmLSQVDHLDQATSYIKDLQ 54
                           679*********************777788879*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.128153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-11362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0047459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-10463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.54E-5658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MERKTVEKNR RMHMKRLCMK LASLIPKEYA TNSKDMLSQV DHLDQATSYI KDLQGRIERM  60
KQRGGIRTSA EGTNKDVDRE MTTEFRLPVV EVRHQDLNLE VVLISGLEKR FKFHQVISVL  120
EEEGAEVLNA NFSVVGEMIF HTIHSQAISS RLGLEASRVS ERLKELIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393604.11e-120PREDICTED: uncharacterized protein LOC103979252
TrEMBLM0SGE61e-119M0SGE6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P20800_0011e-120(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-26bHLH family protein