PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P21310_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

CAMTA

Protein Properties

Length: 239aa MW: 27907.6 Da PI: 10.9252

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P21310_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	166.3	5.2e-52	20	123	2	105
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 l+ ++rwl++ ei++iL n++k++++ e++++p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+vevl+cyYah+e GSMUA_Achr3P21310_001 20 LEAQHRWLRPAEICEILRNYRKFHIAPEPPNKPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVEVLHCYYAHGE 107 5679********************************************************************************** PP CG-1 90 enptfqrrcywlLeee 105 en +fqrr+yw+Lee+ GSMUA_Achr3P21310_001 108 ENVNFQRRSYWMLEER 123 ************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	70.962	15	150	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	6.6E-62	18	144	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.4E-45	21	123	IPR005559	CG-1 DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MAETRLFSLT PQLDIEQILL EAQHRWLRPA EICEILRNYR KFHIAPEPPN KPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVEVLH CYYAHGEENV NFQRRSYWML 120 EERMFPSSCA KKKTMLLGFY LRGEKKSFPS PCAKKKEKGN VARFPRTKKK RKKKLRVPSP 180 RSKKQKKKPC SFCLRGEKKP LLPVAEASSL LARMRRSRRG LVASDEEVTS YAASSEGGW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	153	173	KKKEKGNVARFPRTKKKRKKK
2	167	173	KKKRKKK
3	168	172	KKRKK
4	169	187	KRKKKLRVPSPRSKKQKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009393546.1	3e-87	PREDICTED: calmodulin-binding transcription activator 2
Swissprot	Q6NPP4	3e-67	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	M0SGJ7	1e-174	M0SGJ7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P21310_001	1e-175	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15485	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	5e-69	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]