PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P21430_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 266aa MW: 29745.5 Da PI: 6.9205

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P21430_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.3	2.7e-18	83	136	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA lgL rqV +WFqNrRa++k GSMUA_Achr3P21430_001 83 KKRRLNVEQVRTLEKSFELGNKLEPERKMQLAVALGLRPRQVAIWFQNRRARWK 136 4568999**********************************************9 PP
2	HD-ZIP_I/II	127.9	4.3e-41	82	171	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekkrrl+ eqv++LE+sFe +kLeperK++la +Lgl+prqva+WFqnrRAR+ktkqlEkdy++L+r++da+k+ene+L++++++L+ GSMUA_Achr3P21430_001 82 EKKRRLNVEQVRTLEKSFELGNKLEPERKMQLAVALGLRPRQVAIWFQNRRARWKTKQLEKDYDVLRRQFDAIKAENEALQAHNKKLQ 169 69*************************************************************************************9 PP HD-ZIP_I/II 89 ee 90 +e GSMUA_Achr3P21430_001 170 TE 171 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.584	78	138	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.38E-19	81	140	IPR009057	Homeodomain-like
SMART	SM00389	4.8E-18	81	142	IPR001356	Homeobox domain
CDD	cd00086	2.66E-15	83	139	No hit	No description
Pfam	PF00046	1.4E-15	83	136	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.3E-19	85	145	IPR009057	Homeodomain-like
PRINTS	PR00031	2.0E-5	109	118	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.0E-5	118	134	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-14	138	178	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MSCNGMASSF FPSGFMFQLQ APCEDDHQLV SPVRSLIPTN LHHLRGVAPA TGKRSASFSG 60 AETCEEANGD DELSDDASLA GEKKRRLNVE QVRTLEKSFE LGNKLEPERK MQLAVALGLR 120 PRQVAIWFQN RRARWKTKQL EKDYDVLRRQ FDAIKAENEA LQAHNKKLQT EALALRGREA 180 SDLINLNKET EGSCSNRSEN SSEINLDISR TSVAERSSTT SVGRTVEITA AFSSLVELYC 240 NLMFGVQVPD VERRTLEGIN KETRVL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009393534.1	1e-157	PREDICTED: homeobox-leucine zipper protein HOX21-like isoform X2
Swissprot	Q8LC03	1e-83	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
Swissprot	Q8S7W9	2e-83	HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBL	M0SGK9	0.0	M0SGK9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P21430_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2289	38	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	4e-86	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]