PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P21610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 224aa    MW: 26309 Da    PI: 8.4574
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P21610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.9e-054062123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           + C+ Cg sF+ + ++k+H+ +H
  GSMUA_Achr3P21610_001 40 HACQECGASFRKPAHMKQHMLSH 62
                           67*******************97 PP
2zf-C2H218.36.3e-066892123
                           EEET..TTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                           ++Cp  dC+ s++rk++L+rH  tH
  GSMUA_Achr3P21610_001 68 FSCPvdDCHASYRRKDQLTRHSLTH 92
                           89*******************9998 PP
3zf-C2H216.13.2e-05134152117
                            EEET..TTTEEESSHHHHH CS
                zf-C2H2   1 ykCp..dCgksFsrksnLk 17 
                            y+C+   Cgk+F+ +s Lk
  GSMUA_Achr3P21610_001 134 YVCHepGCGKTFKYPSKLK 152
                            99**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-84068IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00654062IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.6534067IPR007087Zinc finger, C2H2
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
SuperFamilySSF576672.2E-95394No hitNo description
PROSITE profilePS501579.666894IPR007087Zinc finger, C2H2
SMARTSM003550.00566892IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-96994IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807092IPR007087Zinc finger, C2H2
SMARTSM003552597122IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-7128157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552134157IPR015880Zinc finger, C2H2-like
SMARTSM0035527180201IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MYFFKNLIRS HIVASHKFEL EETQSDEVQG INKVDCVMQH ACQECGASFR KPAHMKQHML  60
SHCIERPFSC PVDDCHASYR RKDQLTRHSL THQGGLFTFP VSNCNCKFGI KADMKRHMRE  120
IHEDDSSREG QKQYVCHEPG CGKTFKYPSK LKHEDTHGHI RFQIYLIFSH SHIRTCHQHV  180
DCEVCGTKQL RKNMKRHERK HEMNEMTDRT KCNIKGCECT FSNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A1e-134415219123PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D1e-134415219123PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411993.11e-103PREDICTED: transcription factor IIIA
SwissprotQ84MZ41e-57TF3A_ARATH; Transcription factor IIIA
TrEMBLM0SGM71e-166M0SGM7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P21610_0011e-166(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-60transcription factor IIIA