PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P22360_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 302aa    MW: 34712.8 Da    PI: 6.349
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P22360_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1752.2e-5461341128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWka 85 
                            +ppGfrFhPt+eelv +yL++kv++++++l evi+evd+y++ePw+L+ ++++   e++ewyfFs +d+ky++g+r+nrat++g+Wka
  GSMUA_Achr3P22360_001   6 VPPGFRFHPTEEELVGYYLARKVASQRIDL-EVIQEVDLYRIEPWELQDRCRHgceEQSEWYFFSFKDRKYPSGTRTNRATAAGFWKA 92 
                            69****************************.99**************953333233566***************************** PP

                    NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            tg+dk+vls k++ +g++ktLvfykgrap+g++tdW+mheyrl
  GSMUA_Achr3P22360_001  93 TGRDKPVLS-KSRIIGMRKTLVFYKGRAPNGQRTDWIMHEYRL 134
                            *********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-604155IPR003441NAC domain
PROSITE profilePS5100559.1176155IPR003441NAC domain
PfamPF023654.3E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEKSCVPPGF RFHPTEEELV GYYLARKVAS QRIDLEVIQE VDLYRIEPWE LQDRCRHGCE  60
EQSEWYFFSF KDRKYPSGTR TNRATAAGFW KATGRDKPVL SKSRIIGMRK TLVFYKGRAP  120
NGQRTDWIMH EYRLQSNENE PAQEEGWVVC RAFKKPNLNQ RPCYNNFGHN HYGRLAAKPT  180
CFMDSFQGGA PYERSLGYEI ELESRKNLLD QVLHIPQLDS PSLSSGFSNN EHFEGNCMGS  240
NEHGTGDSSC HGEFVDWKVL DKLLLSQLNE SSSSSNMPIV PVNYDAGVED QGDHFLAMFD  300
RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-54615715170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394029.10.0PREDICTED: NAC domain-containing protein 105-like
RefseqXP_018679459.10.0PREDICTED: NAC domain-containing protein 105-like
RefseqXP_018679460.10.0PREDICTED: NAC domain-containing protein 105-like
RefseqXP_018679461.10.0PREDICTED: NAC domain-containing protein 105-like
SwissprotO655086e-94NAC76_ARATH; NAC domain-containing protein 76
TrEMBLM0SGV20.0M0SGV2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P22360_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36160.17e-96NAC domain containing protein 76
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]