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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GSMUA_Achr3P22840_001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
| Family |
C2H2 |
| Protein Properties |
Length: 315aa MW: 34257.4 Da PI: 4.4269 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_Achr3P22840_001 | genome | CIRAD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.7 | 0.00019 | 289 | 311 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23
+C+ C+++F++ L+ H + H
GSMUA_Achr3P22840_001 289 SCNSCSRTFNSDNALQAHTKAkH 311
7*****************99877 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MEFWGLEVQP GKTVKVDPGE NKLLHLSQAS LGEVKDKGNE GVPVFVKFDN KKLVIGTLSA 60
DKCAQIQYDL VFEKEFELSH GLKNTSIYFL GYKTVIQEEG EYPFDIYTES ESDEEDIPLA 120
QNINGKSEVK EEKPKPSAGK PNALKADASV AKSKPKMEVV KDEKRKADEN DDDDDDDESE 180
EDDSDGDEDM LDEDDDSDDE DADESSDEEE EATPKKVETG NKRPAGSALK TPAPEKKAKV 240
ISPAGNKKTG ADGKKGSYVA TPYPAKQGKT PANSDKSKQQ TPKSAGSISC NSCSRTFNSD 300
NALQAHTKAK HSGGK
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX620437 | 1e-133 | JX620437.1 Gossypium hirsutum clone NBRI_GE66674 microsatellite sequence. |
