PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P23180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 897aa    MW: 99047.1 Da    PI: 8.8613
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P23180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.91.5e-07122142425
                            ---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                            ++Cr+fa  G+C++G++C+F H
  GSMUA_Achr3P23180_001 122 PPCRDFAS-GHCRRGSQCRFLH 142
                            79******.************* PP
2zf-CCCH20.67.8e-07216236425
                            ---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                            elC +f + G C++G++C++ H
  GSMUA_Achr3P23180_001 216 ELCYDFTK-GRCQRGSSCRYLH 236
                            89******.************* PP
3zf-CCCH22.81.6e-07277297425
                            ---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                            ++C++fa+ G C++G +CkF+H
  GSMUA_Achr3P23180_001 277 PPCKYFAE-GRCRRGQNCKFSH 297
                            79******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2E-5118144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.535118145IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5122142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5123143IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178212239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-5212237IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4213238IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4216236IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5216238IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-4273299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.169273300IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-6275298IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5277297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-5278297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MEQYDSKKSS WEPDSESETV KYAEANRELG EQDSSFVQDY NSGVSPGPDA WRRRSRNVSP  60
RGGWRSRSRG RGRSRSRNRN RSRSRSRSWS RSRSRSRSPF GIKRGSERWS DRGRNIAGGQ  120
APPCRDFASG HCRRGSQCRF LHEDGGRGEF DRHNTHSRET NLERGRFSWH NGKENLSGSW  180
DQTDYARNKP FQRQRSHYDD GDREKPELHR SNKPAELCYD FTKGRCQRGS SCRYLHQEAS  240
SHGGWSMKNE AREDNYDRRD PDASFGQKIE SRKVNDPPCK YFAEGRCRRG QNCKFSHQGL  300
DGHLEGKPHD GRWDYDQITG DNLSKSASEL GGQTIAVDKI TPTRWNSGND GVRSAAPQFI  360
EMGDFTHPQH QQTHGTEDDG GQTFRPEGCQ KPASQEQNIT HDAAGPHQHA SSVSMQVMAQ  420
NADKQQYPDD VEMLCQEGGS VITNNIGAKP EMNSVNSMLT VAPITEKCFT QSGPSQYVVP  480
QLLRTQSFTP NVQIPQVVAP LHFSKQMQQV VYPMPPNGQS QFVVPLTPSD AQHLNHSMLN  540
QPALSLPHAV NNQQNFGEQT QQSAPPSPHN GPSQHKLNLS GPNPQFLLSS VNGQNQHNLN  600
PSGQIQQNVL PFNGQSPRNI ALMGQSHQSH VPPQNGQSSA ETKPSPISSG SVISHKVVTS  660
EQAARITDLS ASLAQFFGNG PLHVATLGVP PSQPSLGSSS AVLPAAAFPP SIHPSQAVSD  720
SVGAINPDIN NLPGNPRMEE SETNSKSLLS VSVTDHIGEQ NIDAKQVEPT DGDPLKEVNV  780
TDTGGRGKKE EKAHLGDVDA DVADGANKQT KDAKGSKMFK CALVEFVKDL LKPAWKEGQL  840
SREAHKTIVK KVVDKVTSAV QGPNIPQTQE KIDLYLVHSK AKLSKLVQAY VEKYVKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17686RNRNRSRSRSR
27886RNRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018679192.10.0PREDICTED: zinc finger CCCH domain-containing protein 55 isoform X6
TrEMBLM0SH340.0M0SH34_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P23180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.18e-13C3H family protein