PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P23600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YC
Protein Properties Length: 258aa    MW: 28133.2 Da    PI: 9.6698
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P23600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC43.85.8e-1482119135
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkaded 35 
                            ql++fw++q   ie++tdfknh+lPlarikki+kad d
  GSMUA_Achr3P23600_001  82 QLQAFWANQmleIEQTTDFKNHSLPLARIKKIMKADGD 119
                            89*******8889***********************87 PP
2NF-YC38.32.8e-1211815169102
                  NF-YC  69 nkrrtlkksdiaaavtrtdifdflvdivprdelk 102
                             +rrtl+k+dia+avtrtdifdflvdivprdelk
  GSMUA_Achr3P23600_001 118 GDRRTLQKNDIASAVTRTDIFDFLVDIVPRDELK 151
                            57*****************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.65E-1275141IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.9E-796118IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.5E-8119147IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEQSTQPSRP VIGVVSGAAQ TAYAAPTYQR AAVVTGDPAV TGAVPPPTQM TSAYPTNPAN  60
LASQHQLAYQ QVQQLHHQQH QQLQAFWANQ MLEIEQTTDF KNHSLPLARI KKIMKADGDR  120
RTLQKNDIAS AVTRTDIFDF LVDIVPRDEL KDDGIGIARA AFPAVGAPAD SIPYYYVPAP  180
SQVPGPAMMM GKPVDQAAAA TINSRYQMVS KLTYVLSSVW MLRGMSSRVA CTLSNASIVQ  240
VVAKIVVSRP QWKFAQQQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393265.11e-123PREDICTED: nuclear transcription factor Y subunit C-4
RefseqXP_009393267.11e-123PREDICTED: nuclear transcription factor Y subunit C-4
RefseqXP_009393268.11e-123PREDICTED: nuclear transcription factor Y subunit C-4
RefseqXP_009393269.11e-123PREDICTED: nuclear transcription factor Y subunit C-4
RefseqXP_009393270.11e-123PREDICTED: nuclear transcription factor Y subunit C-4
RefseqXP_018678248.11e-123PREDICTED: nuclear transcription factor Y subunit C-4
RefseqXP_018678249.11e-123PREDICTED: nuclear transcription factor Y subunit C-4
SwissprotQ655V54e-54NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLM0SH760.0M0SH76_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P23600_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-35nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]