PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P23710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 202aa    MW: 21630.6 Da    PI: 8.9913
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P23710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-202270355
                    AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g
  GSMUA_Achr3P23710_001 22 FRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAALQFRG 70
                           8*******.**********83...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-142170IPR001471AP2/ERF domain
PROSITE profilePS5103224.6452178IPR001471AP2/ERF domain
CDDcd000182.34E-202179No hitNo description
SMARTSM003805.2E-392184IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-232279IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-322278IPR001471AP2/ERF domain
PRINTSPR003673.8E-112233IPR001471AP2/ERF domain
PRINTSPR003673.8E-114460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAPRTKGGDA GEGGGNLQVI RFRGVRKRPW GRYAAEIRDP AKKSRVWLGT FDTAEEAARA  60
YDAAALQFRG PKAKTNFPYP DPRHFPAVFV GAGSGSAASS PSSSTVESEK AVAVTGFKTV  120
AMSAYGGAHS ESASSLDMSY SLSPVVMAAP GRRLPFDVDL NLPPPPEGDP TQCCFKSTIC  180
VFDVQLKFFC HLFNLINCFM PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-21980274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085231e-50AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK1117551e-50AK111755.1 Oryza sativa Japonica Group cDNA clone:J023061G02, full insert sequence.
GenBankAP0149611e-50AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankAY5765271e-50AY576527.1 Oryza sativa ethylene-responsive element binding factor (EREBP) mRNA, complete cds.
GenBankCP0126131e-50CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8324821e-50CT832482.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA010C22, full insert sequence.
GenBankCT8416511e-50CT841651.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C107P12, full insert sequence.
GenBankEU8475181e-50EU847518.1 Oryza sativa Japonica Group clone OsEP2 AP2/ERF domain protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393257.16e-77PREDICTED: ethylene-responsive transcription factor 8-like
TrEMBLM0SH871e-147M0SH87_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P23710_0011e-147(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.13e-26ERF domain protein 11