PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P23780_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 723aa    MW: 81061.6 Da    PI: 6.264
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P23780_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP107.68.4e-34119195177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cqv+gCead+ e+k yhrrh+vC  ++ ap v+++g+++r+CqqC++fh+ls+fDe+krsCrr+L++hn+ rr+++
  GSMUA_Achr3P23780_001 119 RCQVPGCEADIGELKGYHRRHRVCLRCACAPCVVLDGQSKRYCQQCGKFHMLSDFDEGKRSCRRKLERHNKIRRRRH 195
                            6**********************************************************************888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.9E-27117181IPR004333Transcription factor, SBP-box
PROSITE profilePS5114128.701117194IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-31118197IPR004333Transcription factor, SBP-box
PfamPF031101.3E-24120193IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MEAPELLDFA VDDEEDGTLF PAWEFGASDL PTPCPLPATV PPPILPSPRA AAGEGSEPVG  60
KRDPRLLCSN FLEGRVPCSC PAADEVEPAE WGDKPMAGAV GGDRKRARKA RATPVAALRC  120
QVPGCEADIG ELKGYHRRHR VCLRCACAPC VVLDGQSKRY CQQCGKFHML SDFDEGKRSC  180
RRKLERHNKI RRRRHTDGVS MMGKEKDPHG SLQMNVSCVD KSMTEMLFGV ACHTEEKVIN  240
NKLMERKVLH ESDDGCDTKF NLLSGFTTIR GNSFLSFAAS SEPQNEEKDD NPKSPISFTL  300
CNSKSTYSST CPTGRVSFKL YDWNPAEFPR QLRHQIFKWL ESMPVELEGY IRPGCTFMTI  360
FIAMPDFMWE KLSQDVAGCI ENLIYAPESL LVRRGNIHIY LCDTIVQILK DQKPLMSTRM  420
EVQVPRLHYV YPTLFEAGRP VEFIACGTNL NRAKLRFLVS FAGKYLELSS CLAISHHVTK  480
PCNINDTDHI CDDEHEMFQI NIPQTDSDVF GPAFLEVENE LGVSNFVPIL FGSKLICSEF  540
ERISRAIFDS CCSDGIYRTM NIDATSYSDN SFVSKQIGIP ALLLDIAWVL QEPGSEKSEQ  600
LLSSTSIHRL VNLLKFLLQI RSLILMEVVL HYVDGINSLS LHEVNNTLDG DWLLFLNYIN  660
QAREVLSQRT TQHMRSESGS RNLSPCPHFS RSSRENDTKD SMLSANQVSS TTFLVLASLP  720
GNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A7e-40119197583squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180192RRKLERHNKIRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393247.10.0PREDICTED: squamosa promoter-binding-like protein 9 isoform X1
TrEMBLM0SH940.0M0SH94_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P23780_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-157squamosa promoter binding protein-like 7