PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P24300_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 136aa    MW: 15586.8 Da    PI: 8.7832
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P24300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1353e-111774663
                           HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                            ++rk +NRe+ArrsR RK++ + eL+     L+ eN++  +++e+l +  + l+se+
  GSMUA_Achr3P24300_001 17 TQKRKLSNRESARRSRMRKQQHLLELTSDETRLKLENRQILERVERLAQGHQWLESEN 74
                           69**********************************************9988888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.9E-111276IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5071477IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.2E-81595No hitNo description
SuperFamilySSF579591.41E-91670No hitNo description
PfamPF001702.3E-81664IPR004827Basic-leucine zipper domain
CDDcd147022.43E-121865No hitNo description
PROSITE patternPS0003601934IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSAARSRQSL LAVNERTQKR KLSNRESARR SRMRKQQHLL ELTSDETRLK LENRQILERV  60
ERLAQGHQWL ESENAVLRAE VAELAESLRS LESVLCYAEE FDGVATDAVK PSDHLLRRWP  120
PACVMASASD AMLFLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12835RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtMay contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393176.17e-93PREDICTED: ocs element-binding factor 1-like
SwissprotP240683e-25OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLM0SHE62e-91M0SHE6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P24300_0013e-92(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18160.19e-15basic leucine-zipper 2
Publications ? help Back to Top
  1. Singh K, et al.
    OCSBF-1, a maize ocs enhancer binding factor: isolation and expression during development.
    Plant Cell, 1990. 2(9): p. 891-903
    [PMID:2152133]