PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P24560_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 232aa    MW: 26787.1 Da    PI: 9.1952
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P24560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.79.8e-161151343
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                           i n+  r  t+ kRr+g++KK  ELS+LC++e++v+++ ++
  GSMUA_Achr3P24560_001 11 IVNDATRRATLKKRRKGLIKKVRELSILCGVEACVVVYTPH 51
                           679999********************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.7E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.114149IPR002100Transcription factor, MADS-box
CDDcd002661.63E-28285No hitNo description
SuperFamilySSF554555.62E-22395IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.4E-161153IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MARNKVKLAW IVNDATRRAT LKKRRKGLIK KVRELSILCG VEACVVVYTP HENQPVAWPS  60
LQEAVQMMAR FKSMPEIERS RKMVNQEAFL HQRIAKLLEQ LRRQQRENRE IEMTWLTWEG  120
FHGRSFDDLD VEDASALAWS VETKLKEVSD RREELLKRLA MAPPPPPMPV VPAATVTGMM  180
PLPMERINTV NQGHAAEGSQ RLNWLMDIMS PWSEEGQMYV DPISSWPDSL FP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393997.11e-171PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM0SHH21e-170M0SHH2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P24560_0011e-170(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-28AGAMOUS-like 80