PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P24960_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 602aa MW: 65551.7 Da PI: 8.7817

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P24960_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.2	2.7e-11	163	223	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 +e kr r+ +NRe+A+ sR RKk+++eeLe+kv + + +L +++ + e +l+++ GSMUA_Achr3P24960_001 163 EEEKRRARLVRNRESAQLSRHRKKQYVEELEDKVRLMHSTINELNTKISYIMAENISLRQQ 223 7889*********************************999999999999888888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.1E-13	162	226	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.5E-9	163	223	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.404	164	224	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.0E-15	166	224	No hit	No description
SuperFamily	SSF57959	2.44E-12	166	224	No hit	No description
CDD	cd14704	3.90E-19	167	217	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MAEPSPSLLL LPNPPYGDLF PDGLPLLPSS SELHDIDLDF DIDDFLRSPD PHHHSPTSDP 60 NSAADGSAVS SSSSTQHDRS GLAPRPSSPD SSAASGLAVV VDPEVKEKEG KVGWSLKRKM 120 EKDNDGLSDR RTDSDLNPNP RSIKFQRSEE ASPPCIFGSG SQEEEKRRAR LVRNRESAQL 180 SRHRKKQYVE ELEDKVRLMH STINELNTKI SYIMAENISL RQQLVGGVAP PSPVYPRPGA 240 MAPVNVQWIP RYSLNPQGTQ VPLVPIPRLK LQKATLAPKA KKSESKKGQS NTKRVASVSL 300 MGLLFLILIV RGAFPSLNLR YGGYDDDEGL SNGRILCQAK SRILSVRGGI DSVTARKSVF 360 TQNSSESLPA LLYVPRNGKH VKIDGNLIIH SVLASEKAVQ QTESSQSLDK ETGLAIADAS 420 DSDDTYVNNL KLTSSDGPHQ QWFHEGMAGP ILSSGMCTEV FQFDVSSSSS STSIFPTSSI 480 MNGSSITNAT ENLPPSSARP GKNKNRRIMH PEPLPLRGTT RNNTKQFDKS SERSNLHNNK 540 PVSSVVVSVL ADPRDAGDGE GDERISPKST SRVFVVVLLD SIKYVTYSCV LPFKTSAPHL 600 VN

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MAEPSPSLLL LPNPPYGDLF PDGLPLLPSS SELHDIDLDF DIDDFLRSPD PHHHSPTSDP  60
NSAADGSAVS SSSSTQHDRS GLAPRPSSPD SSAASGLAVV VDPEVKEKEG KVGWSLKRKM  120
EKDNDGLSDR RTDSDLNPNP RSIKFQRSEE ASPPCIFGSG SQEEEKRRAR LVRNRESAQL  180
SRHRKKQYVE ELEDKVRLMH STINELNTKI SYIMAENISL RQQLVGGVAP PSPVYPRPGA  240
MAPVNVQWIP RYSLNPQGTQ VPLVPIPRLK LQKATLAPKA KKSESKKGQS NTKRVASVSL  300
MGLLFLILIV RGAFPSLNLR YGGYDDDEGL SNGRILCQAK SRILSVRGGI DSVTARKSVF  360
TQNSSESLPA LLYVPRNGKH VKIDGNLIIH SVLASEKAVQ QTESSQSLDK ETGLAIADAS  420
DSDDTYVNNL KLTSSDGPHQ QWFHEGMAGP ILSSGMCTEV FQFDVSSSSS STSIFPTSSI  480
MNGSSITNAT ENLPPSSARP GKNKNRRIMH PEPLPLRGTT RNNTKQFDKS SERSNLHNNK  540
PVSSVVVSVL ADPRDAGDGE GDERISPKST SRVFVVVLLD SIKYVTYSCV LPFKTSAPHL  600
VN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22084314}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269\|PubMed:22084314}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009393105.1	0.0	PREDICTED: bZIP transcription factor 17-like
Swissprot	Q6AU90	1e-131	BZP39_ORYSJ; bZIP transcription factor 39
TrEMBL	M0SHL2	0.0	M0SHL2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P24960_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8228	35	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	6e-97	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]