PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P25660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 162aa    MW: 18045.6 Da    PI: 8.4196
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P25660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1749.5e-5461536169
                  YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 
                             +eq Cyv+CnfCnt l+v+vP + l++vvtvrCG C++llsv+l+     l+ +s           ++++  + + ++   +++  +
  GSMUA_Achr3P25660_001   6 FPEQACYVNCNFCNTPLVVNVPGNNLLNVVTVRCGLCANLLSVDLEALLGKLPHQSF----------QNHNPGSLHPHMDCGSSSRCT 83 
                            689********************************************9999998884..........445555555555555555555 PP

                  YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                            +  ++++++  +++  p     i+P ekr rvPsayn+fikeei+r+ka++Pdishreafs+aaknWahfP+ihfg
  GSMUA_Achr3P25660_001  84 RLSAMNSVDCVQQQTHP-----IQPTEKR-RVPSAYNKFIKEEIRRLKAKDPDISHREAFSTAAKNWAHFPEIHFG 153
                            56666566666666655.....899**98.9********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.9E-607153IPR006780YABBY protein
SuperFamilySSF470958.25E-799148IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-4103149IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MSDHVFPEQA CYVNCNFCNT PLVVNVPGNN LLNVVTVRCG LCANLLSVDL EALLGKLPHQ  60
SFQNHNPGSL HPHMDCGSSS RCTRLSAMNS VDCVQQQTHP IQPTEKRRVP SAYNKFIKEE  120
IRRLKAKDPD ISHREAFSTA AKNWAHFPEI HFGPSVKGSK QV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018678998.11e-119PREDICTED: protein YABBY 2-like
SwissprotQ10FZ72e-54YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0SHT21e-118M0SHT2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P25660_0011e-119(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.16e-42YABBY family protein