PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P25950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 352aa    MW: 38806.4 Da    PI: 6.013
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P25950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-07268308954
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             r+RR+ri +++ +L++l+P         ++ a++L +A +Y+k L
  GSMUA_Achr3P25950_001 268 ARQRRERISERLRKLQSLVPGG-----SQMDTATMLDEAANYLKFL 308
                            69******************95.....48***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.24E-10250313No hitNo description
PROSITE profilePS5088814.754259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-12265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-13265322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-10265316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.5E-5268308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MESLGNHYDS FAGSDEEFSD MAGKLELDDL FLASSIQSQE ITVGEASLDS NKIGEMVDAS  60
IPPPDTMNRT VLHLQDMIRL DAHPHELMES GAVWGDALLS QACAASQPIS GYCNEARADG  120
ISATFSGSEN FRNLSCTGDI SSGKSKNHGS FDQHRWSRGA VASEVSPNPL PNAKRKFEEC  180
TGIGENKTSL LQPSSLKKPR PEKHSGSSTI NFGRDSNYEP DTEAVAQVKE MIYRVAALRP  240
VTLEMVDAVE KPRRKNVRIS SDPQTVAARQ RRERISERLR KLQSLVPGGS QMDTATMLDE  300
AANYLKFLKS QVRILETLDN RHDPGNNSTM HPFPFHLSQA FAVQQLYPTQ KP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249255EKPRRKN
2250255KPRRKN
3268273RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009393979.10.0PREDICTED: uncharacterized protein LOC103978780
RefseqXP_018678511.10.0PREDICTED: uncharacterized protein LOC103978780
TrEMBLM0SHW10.0M0SHW1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P25950_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.19e-41bHLH family protein