PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P27560_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LSD

Protein Properties

Length: 207aa MW: 22156.2 Da PI: 8.2844

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P27560_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.6	1.7e-12	91	115	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP+GA+sV+Ca+C +V GSMUA_Achr3P27560_001 91 CSGCRNLLLYPLGATSVCCAVCSAV 115 **********************998 PP
2	zf-LSD1	44.1	3.3e-14	130	154	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL++ rGA+sV+C++C+tV GSMUA_Achr3P27560_001 130 CGGCHTLLMFIRGATSVQCSCCHTV 154 ************************9 PP
3	zf-LSD1	36.4	8.3e-12	168	192	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C +V GSMUA_Achr3P27560_001 168 CGSCHMLLMYQYGARSVKCAVCSFV 192 **********************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.4E-11	88	118	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	2.4E-6	91	173	IPR011031	Multihaem cytochrome
Pfam	PF06943	6.5E-10	91	115	IPR005735	Zinc finger, LSD1-type
Gene3D	G3DSA:3.90.10.10	8.0E-5	106	189	No hit	No description
TIGRFAMs	TIGR01053	1.1E-13	127	156	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.0E-11	130	154	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	1.6E-10	165	194	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.2E-11	168	192	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009814	Biological Process	defense response, incompatible interaction
GO:0034051	Biological Process	negative regulation of plant-type hypersensitive response
GO:0034052	Biological Process	positive regulation of plant-type hypersensitive response
GO:0045595	Biological Process	regulation of cell differentiation
GO:2000121	Biological Process	regulation of removal of superoxide radicals

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MALMEIVGFR RLLQLSILPF WFPLKGNMNK NPSFLTQIGD GSANLCLMLK EDTVLGRRIR 60 HKPEMPVPLV PYPTPPVPFT PPNGGQSQLV CSGCRNLLLY PLGATSVCCA VCSAVTAVPP 120 PGTEMAQLIC GGCHTLLMFI RGATSVQCSC CHTVNLALEA NQVAHVNCGS CHMLLMYQYG 180 ARSVKCAVCS FVTSVGALPS TEQKPSS

Functional Description ? help Back to Top
Source	Description
UniProt	Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269\|PubMed:15915636}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. Down-regulated by dark. {ECO:0000269\|PubMed:15915636}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392782.1	1e-112	PREDICTED: protein LSD1-like
Swissprot	Q0J7V9	3e-79	LSD1_ORYSJ; Protein LSD1
TrEMBL	M0SIC2	1e-149	M0SIC2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P27560_001	1e-149	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	8e-59	lsd one like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]