PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P27600_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HSF

Protein Properties

Length: 426aa MW: 47511.7 Da PI: 4.6447

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P27600_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.3	1.6e-35	34	126	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl+k+ye+++d++++ ++sw +nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g GSMUA_Achr3P27600_001 34 FLSKTYEMVDDSATDAIVSWGPANNSFVVWNTIEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRG 112 9******************999*************************************999.........******* PP XXXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkkse 103 +k+ll+ i r+ks+ GSMUA_Achr3P27600_001 113 QKHLLKAISRRKST 126 *********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.0E-38	28	118	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.43E-35	30	123	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.3E-61	30	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-20	34	57	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.6E-31	34	123	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-20	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	73	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.2E-20	85	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MNGEGGDADG ASASASTVAT TANACLNGGA PPPFLSKTYE MVDDSATDAI VSWGPANNSF 60 VVWNTIEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKHLLKAI 120 SRRKSTHGHN QQPQQQQQQQ PQTQNTIEEL VRLRQQQQTT DQQLNTLGQR LQGMEQRQQQ 180 MMSFLAKAMQ SPGFLAQLVQ QNDNNRRIVG VSKKRRLPRQ ENELDGETTM QDGQIIKYQP 240 LINEAAKAML MQILKYDTSP RLESFGNSQN FLIENYSSPL EAFDSSSLKR TSGVTLSEIQ 300 SSSNVAHMVT TTKMPNMDLS YAGSNGGSIP MNPISDVMDE LAGIETEKFT SDMDILSDDE 360 QLPSINDPFW EQFLTASPLL GDADEVDSDL HETEEIGLEA GNYGDSTQSM DHLTMQMGHL 420 APHSNK

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MNGEGGDADG ASASASTVAT TANACLNGGA PPPFLSKTYE MVDDSATDAI VSWGPANNSF  60
VVWNTIEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL RGQKHLLKAI  120
SRRKSTHGHN QQPQQQQQQQ PQTQNTIEEL VRLRQQQQTT DQQLNTLGQR LQGMEQRQQQ  180
MMSFLAKAMQ SPGFLAQLVQ QNDNNRRIVG VSKKRRLPRQ ENELDGETTM QDGQIIKYQP  240
LINEAAKAML MQILKYDTSP RLESFGNSQN FLIENYSSPL EAFDSSSLKR TSGVTLSEIQ  300
SSSNVAHMVT TTKMPNMDLS YAGSNGGSIP MNPISDVMDE LAGIETEKFT SDMDILSDDE  360
QLPSINDPFW EQFLTASPLL GDADEVDSDL HETEEIGLEA GNYGDSTQSM DHLTMQMGHL  420
APHSNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-26	32	126	18	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009392772.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-153	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	M0SIC6	0.0	M0SIC6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P27600_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5097	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-95	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]