PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P27750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 469aa    MW: 51391.3 Da    PI: 8.4967
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P27750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.6e-40180256177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +CqvegC+ dls ak+yhr+h+vCe+hsk p+v+v g+e+rfCqqCsrfhelsefD++krsCrrrL++hn+rrrk++
  GSMUA_Achr3P27750_001 180 CCQVEGCNIDLSVAKDYHRKHRVCEMHSKWPKVIVGGQERRFCQQCSRFHELSEFDQKKRSCRRRLSDHNARRRKPR 256
                            6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.2E-33173242IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.274178255IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-38179260IPR004333Transcription factor, SBP-box
PfamPF031102.5E-32181254IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MVHEKAHLFS PSGFDTLFRS PLVDSACNLS ARMMDWNANA SLLWDWDNHA PFGGNCKLFG  60
GGASSGSEFG NGSSSKSTIS ASFDSSSKAG KEPEADANPK THEKNKFLQE SGSSLLPAAA  120
AGLEESQIGL KLGKRTYFED VSAESNSKNH PLSSSLDSAS VPTAVLKKSR VSHQSAQSTC  180
CQVEGCNIDL SVAKDYHRKH RVCEMHSKWP KVIVGGQERR FCQQCSRFHE LSEFDQKKRS  240
CRRRLSDHNA RRRKPRTNLI SFNSTNFSSS LYDDKHQMNL LWNKAPFGHM KPVASTNIEG  300
LPSFKLTQKG SWEKSPKDGG TDAQLHLPNA QLSNGFFTLY PDVDKLLPLK GTATEVLNQG  360
SEASAGALNL GGAPDLRRAL SLLSTNSWGS PDPGQTSSIV EFVDASHTST AQPMVPTINS  420
SSHWIHGQPL AQQPQLLPFT MHRSGNQPQE LLLQNTPYRD NLFDPSQIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261812541184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236253KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018679621.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
TrEMBLM0SIE10.0M0SIE1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P27750_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36973776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.32e-51squamosa promoter binding protein-like 2