PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P29320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 210aa    MW: 23442.8 Da    PI: 10.1078
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P29320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-084792555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           h +rEr+RR+++ ++++ L +++ ++      K +K +i + A +Y+ +Lq
  GSMUA_Achr3P29320_001 47 HMMRERQRREKLSQSYADLYSMIASR-----SKGDKNSIIQSAAQYVLELQ 92
                           889**********************8.....6999999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1336108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.6814291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1046109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-64692No hitNo description
PfamPF000105.4E-64792IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-64897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSECCSSETR SGGDGGRNIH RRVIEMLRRI PKGEEPSGVE TSRGFRHMMR ERQRREKLSQ  60
SYADLYSMIA SRSKGDKNSI IQSAAQYVLE LQGVQKALQK RNEELKAEIL RNNATDGAKI  120
KISVTNPSSS IDSMIGALRC LKSLDVKAKA IRSDLSSTEF SATMSIDTKM ATADVERVVQ  180
GALMEVEKKL HRQLPGINTR SQQCHVENMI
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394452.11e-152PREDICTED: transcription factor BHLH148-like
SwissprotQ75KV93e-57BH148_ORYSJ; Transcription factor BHLH148
TrEMBLM0SIU81e-152M0SIU8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P29320_0011e-153(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-31bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]