PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P29520_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 233aa    MW: 24778 Da    PI: 4.5386
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P29520_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.48.6e-324107199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                            +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++
  GSMUA_Achr3P29520_001   4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSG 91 
                            6*************************************************************************************** PP

                 DUF260  84 qqqleqlkaelallke 99 
                            ++ql+q+++e++l ++
  GSMUA_Achr3P29520_001  92 SWQLCQAAVEAVLKGS 107
                            **********998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.9833109IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGSPIV QIPSETVASI  120
PAPPLKAYDI RHSVASDATV PVTPSAAAGG EDGECRENEC MSSADTAEEA SHVSQGEPEQ  180
PDEDEVGLEL TLGFEPVSSE PAPRPAPEAR RHLSCWDADA CTADLGLALP ATS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394433.11e-161PREDICTED: LOB domain-containing protein 40
SwissprotQ9M8862e-81LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM0SIW81e-170M0SIW8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P29520_0011e-170(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-81LOB domain-containing protein 41