PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P29970_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 531aa    MW: 56224.4 Da    PI: 6.1141
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P29970_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS237.27.2e-731625303374
                   GRAS   3 elLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            +lL+++A++++++d++ a+ +L+rl+++  ++g +p+ R+++ f+eAL a l        ++ +p  ++  + ++++aa+k+f ++sP
  GSMUA_Achr3P29970_001 162 DLLISAARCLEANDFATAHVILSRLNHHLPSAGaSPLLRAVFLFKEALLALLRP------STAEPLLSA-AELVRHIAAHKAFADLSP 242
                            69**************************7666669****************999......444444443.4699************** PP

                   GRAS  90 ilkfshltaNqaIleave.geervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeel 172
                            ++ f+ +ta q++ ea++ g++ +H iDfd++ G+QW ++ q+La R+    ++pp +RiT+v+++   ++ e+   +++L++fA+ l
  GSMUA_Achr3P29970_001 243 VPHFATFTATQTVIEALDcGARSIHLIDFDLGLGGQWSSFAQELAGRSrvsrSSPPAVRITAVVAE---ESGETVLAADNLRDFARGL 327
                            *****************945599**********************999889889***********4...577788899********** PP

                   GRAS 173 gvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFler 256
                            ++++  n++ +  l +l l+ +r+   gE +aV l  +++rll   ++++++  ++L++v+++ P+vvv+v+ e   +++   s+ + 
  GSMUA_Achr3P29970_001 328 NISLAVNFVRVGGLGTLALSGFRLAGsGEPTAVVLTPAIFRLLGCGAASPDTAAALLRFVRRVCPRVVVFVDTEGGSGGHpppSLRRT 415
                            ********9999************999*****************9999**************************888665465899** PP

                   GRAS 257 flealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341
                            ++  +e+y+++++s+ea ++++    ++ ++vEr+++++++  +v    a        l+ Wre + +aG +p+p+se+a++qa+ l+
  GSMUA_Achr3P29970_001 416 VAAGVEHYATVLESVEAAAAETGareDTVRWVERAVMRPRVAAAVGEWAA-------GLGPWRELFAAAGWSPLPFSEFAESQAEWLV 496
                            ***************9987777665577889*********9999876555.......6****************************** PP

                   GRAS 342 rkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                            r++++ gy+v  +  g+lvl W++r++ s+SaWr
  GSMUA_Achr3P29970_001 497 RRTPVGGYHVARReGGALVLSWRGREMASTSAWR 530
                            ***********76256677**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.917134509IPR005202Transcription factor GRAS
PfamPF035142.5E-70162530IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MKHPKALTDS PQQHQQPPTH HHFSLTSKPL LDSSPTVDSN NVSVAALDDE PTSVLDHHLT  60
SSPATAPTAA PTAAASAAAA DLPFLSWAGG GDAHHHHPLL SSDDWDTASL LFAERCDLPP  120
FTDDSDPQFL DAPFDLPFDP FAAAADHAIP SPASSFDRAQ LDLLISAARC LEANDFATAH  180
VILSRLNHHL PSAGASPLLR AVFLFKEALL ALLRPSTAEP LLSAAELVRH IAAHKAFADL  240
SPVPHFATFT ATQTVIEALD CGARSIHLID FDLGLGGQWS SFAQELAGRS RVSRSSPPAV  300
RITAVVAEES GETVLAADNL RDFARGLNIS LAVNFVRVGG LGTLALSGFR LAGSGEPTAV  360
VLTPAIFRLL GCGAASPDTA AALLRFVRRV CPRVVVFVDT EGGSGGHPPP SLRRTVAAGV  420
EHYATVLESV EAAAAETGAR EDTVRWVERA VMRPRVAAAV GEWAAGLGPW RELFAAAGWS  480
PLPFSEFAES QAEWLVRRTP VGGYHVARRE GGALVLSWRG REMASTSAWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-1919753039375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394367.10.0PREDICTED: scarecrow-like protein 15
TrEMBLM0SJ130.0M0SJ13_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P29970_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17202711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.19e-58GRAS family protein