PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr3P30130_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 208aa MW: 22187.2 Da PI: 8.2717

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr3P30130_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.8	1.1e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C+++C l+p++ +++q++++ +v+k+FG++ ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg+++++ GSMUA_Achr3P30130_001 2 SCNGCRVLRKGCSDSCLLRPCLqwidsAEAQAHATVFVAKFFGRAGLMSFISAVPPSQRPALFQSLLFEACGRTINPVNGAVGLLWAG 89 6*******************9999777889**************************************************** PP DUF260 84 qqqleqlkaelall 97 +++l+q+++e++l+ GSMUA_Achr3P30130_001 90 NWHLCQEAVETVLR 103 ******998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.372	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.2E-26	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSCNGCRVLR KGCSDSCLLR PCLQWIDSAE AQAHATVFVA KFFGRAGLMS FISAVPPSQR 60 PALFQSLLFE ACGRTINPVN GAVGLLWAGN WHLCQEAVET VLRGGTLRSL FGHGDDETPE 120 ADGPCPRPRI GFSSFSAAKR RKAPAPSDAA AACDLDLCLT RRSPAGGFEE KRRRRPATPS 180 MNSEGSVTTS GGESDSSTAE PRLLNLFA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009394344.1	1e-150	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SZE8	1e-67	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	M0SJ29	1e-149	M0SJ29_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr3P30130_001	1e-149	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-67	LOB domain-containing protein 37