PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P30440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26303.2 Da    PI: 10.2681
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P30440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva++ifs++gklyeys+
  GSMUA_Achr3P30440_001  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSPKGKLYEYST 59
                           79***********************************************96 PP
2K-box67.16e-238617612100
                  K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqi.e.elqkkekelqeenkaLrkk 97 
                            + + s+++e+ kLk+++e Lq+ qR+l+Ge+Le L+lkeLqqLe+qL++sl+  Rs+K    l+ + +     +ek+l+e++  L+kk
  GSMUA_Achr3P30440_001  86 RSQVSWCHEYGKLKAKVEALQKRQRQLMGEELEALTLKELQQLERQLDTSLRLMRSRKASRSLSTTvSiPIPAQEKSLEEQHSILEKK 173
                            55679*****************************************************8654444303146789999**********9 PP

                  K-box  98 lee 100
                            ++e
  GSMUA_Achr3P30440_001 174 IME 176
                            986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.688161IPR002100Transcription factor, MADS-box
CDDcd002653.02E-40276No hitNo description
SuperFamilySSF554552.35E-33289IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-313859IPR002100Transcription factor, MADS-box
Gene3DG3DSA:1.10.10.108.2E-459136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF014867.8E-2087174IPR002487Transcription factor, K-box
PROSITE profilePS5129713.29388180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALVIFSP KGKLYEYSTN  60
SSMEKLLQRY YESSYAERAL VEADPRSQVS WCHEYGKLKA KVEALQKRQR QLMGEELEAL  120
TLKELQQLER QLDTSLRLMR SRKASRSLST TVSIPIPAQE KSLEEQHSIL EKKIMENDNN  180
HKASKDSLPT LNTRTYPERA AVGVERPVQP GAGKKSDSLP PWMLSHVEGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A6e-22174173MEF2 CHIMERA
6byy_B6e-22174173MEF2 CHIMERA
6byy_C6e-22174173MEF2 CHIMERA
6byy_D6e-22174173MEF2 CHIMERA
6bz1_A7e-22174173MEF2 CHIMERA
6bz1_B7e-22174173MEF2 CHIMERA
6bz1_C7e-22174173MEF2 CHIMERA
6bz1_D7e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4118423e-70AF411842.1 Elaeis guineensis MADS box transcription factor (SQUA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018679409.11e-153PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ10CQ16e-74MAD14_ORYSJ; MADS-box transcription factor 14
TrEMBLM0SJ581e-167M0SJ58_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P30440_0011e-168(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-69MIKC_MADS family protein
Publications ? help Back to Top
  1. Jia H, et al.
    Characterization and transcriptional profiles of two rice MADS-box genes.
    Plant Sci., 2000. 155(2): p. 115-122
    [PMID:10814814]
  2. Jang S,An K,Lee S,An G
    Characterization of tobacco MADS-box genes involved in floral initiation.
    Plant Cell Physiol., 2002. 43(2): p. 230-8
    [PMID:11867703]
  3. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]
  4. Li D, et al.
    Functional characterization of rice OsDof12.
    Planta, 2009. 229(6): p. 1159-69
    [PMID:19198875]
  5. Tanaka N, et al.
    The COP1 ortholog PPS regulates the juvenile-adult and vegetative-reproductive phase changes in rice.
    Plant Cell, 2011. 23(6): p. 2143-54
    [PMID:21705640]
  6. Kobayashi K, et al.
    Inflorescence meristem identity in rice is specified by overlapping functions of three AP1/FUL-like MADS box genes and PAP2, a SEPALLATA MADS box gene.
    Plant Cell, 2012. 24(5): p. 1848-59
    [PMID:22570445]
  7. Wei X, et al.
    Fine mapping of BH1, a gene controlling lemma and palea development in rice.
    Plant Cell Rep., 2013. 32(9): p. 1455-63
    [PMID:23689259]
  8. Su L,Shan JX,Gao JP,Lin HX
    OsHAL3, a Blue Light-Responsive Protein, Interacts with the Floral Regulator Hd1 to Activate Flowering in Rice.
    Mol Plant, 2016. 9(2): p. 233-244
    [PMID:26537047]
  9. Wu F, et al.
    The ABCs of flower development: mutational analysis of AP1/FUL-like genes in rice provides evidence for a homeotic (A)-function in grasses.
    Plant J., 2017. 89(2): p. 310-324
    [PMID:27689766]